Genomic mapping

Species with genomic mapping

Genomic mapping is available for the following 21 species:

Species Assembly
Bombyx mori silkworm ASM15162v1
Plasmodium falciparum ASM276v2
Schizosaccharomyces pombe ASM294v2
Drosophila melanogaster fruit fly BDGP6.32
Aegilops tauschii Tausch's goatgrass ASM34733v1
Dictyostelium discoideum dicty_2.7
Brassica rapa field mustard IVFCAASv1
Bos taurus cattle ARS-UCD1.2
Felis catus domestic cat Felis_catus_9.0
Gallus gallus chicken GRCg6a
Homo sapiens human GRCh38.p13
Mus musculus mouse GRCm39
Danio rerio zebrafish GRCz11
Pan troglodytes chimpanzee Pan_tro_3.0
Saccharomyces cerevisiae baker's yeast R64-1-1
Rattus norvegicus Norway rat Rnor_6.0
Arabidopsis thaliana thale-cress TAIR10
Macaca mulatta Macaque Mmul_10
Anopheles gambiae African malaria mosquito AgamP4
Caenorhabditis elegans C.elegans WBcel235
Xenopus tropicalis tropical clawed frog Xenopus_tropicalis_v9.1

About genomic mapping

RNAcentral imports genome locations from Ensembl, LNCipedia, miRBase, and other Expert Databases. In addition, sequences are mapped to the reference genomes downloaded from Ensembl and Ensembl Genomes using blat.

Data access

RNAcentral sequences can be viewed in their genomic context using a light-weight genome browser powered by Genoverse. External links are provided to the fully-featured genome browsers such as Ensembl, Ensembl Genomes, and UCSC genome browser.

The genomic coordinates of the RNAcentral entries can be downloaded in BED format from the FTP site or through the REST API.


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